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Center for Microscopy and Image Analysis

Lunaphore COMET (Schlieren)

Lunaphore COMET

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The Lunaphore COMET system is a fully automated, high-throughput multiplex immunofluorescence platform designed for spatial biology and tissue profiling. By integrating microfluidics, staining, and imaging in one streamlined workflow, COMET enables the analysis of multiple biomarkers (40+ plex) on a single tissue section without compromising sample integrity.

Responsible Person

responsible person

Location

University Zurich, Schlieren Campus, Room WAD-12-K-105.

Training Request

Follow this link to apply for an introduction to the microscope

Applications

Multiplex sequential immunofluorescence (seqIF) and RNAscope HiPlex
Plex-level
  • Proteomics application: performs 40-plex protocols per automated run
  • Multiomics application: performs 12 RNA plus up to 24 protein targets, or 4 RNA plus up to 28 protein targets

Technical Specifications

Slide capacity

4 slides

Slide compatibility

Standard histology slides - 75 mm x 25 mm (3 in x 1 in), 1 mm thick, positively charged such as Epredia SuperFrost Plus

Sample fixation

Optimized for FFPE samples and frozen sections

Sample thickness

3-10 μm 

Automation level

Fully automated: staining, target probe hybridization, image acquisition and image preprocessing

Maximum imaging area 

12.5 mm x 12.5 mm

Maximum staining area

21 mm x 21 mm
SA
Zoom (PNG, 193 KB)

 

Throughput

Measured for a 9 mm x 9 mm imaging area: 20 slides/week for 20-plex protein panel ; 12 slides/week for 40-plex protein panel

Reagents

Open choice of primary antibodies (non-conjugated):
  • Offered by Lunaphore: SPYRE™ Antibody Panel kits & Tumor Markers (see Reagents bellow)
  • Other standard primary antibodies of choice
Secondary antibodies:
  • Only Alexa Fluor™ Plus 488, 555, 647, or 750 shall be used for secondary antibody labeling on COMET, as they are specifically matched to FITC, TRITC, Cy5, and Cy7 channels and ensure optimal performance.
  • For RNAscope™ HiPlex Pro detection kit, RNAscope™HiPlex probes offered by ACD (Biotechne)

Software

  • COMET™ Control Software – for instrument operation
  • COMET Emulator Software - available for Reagent and Protocol builder on Special VM F
  • Panel Builder – online application for automated generation of ready-to-use protocols
  • HORIZON™ Viewer– for image visualization and quality control
  • HORIZON™ Software – for image analysis (optional)
  • Oncotopix® Discovery (Visiopharm)
  • HALO® & HALO, AI™ (Indica Labs)
  • Nucleai AI-powered solutions
  • QuPath

Available Optics

20X / 0.7 NA

Image resolution

0.28 µm/pixel

Available Channels

DAPI, FITC, TRITC, Cy5, Cy7

Output file format

OME-TIFF
IP
Zoom

 

User Guide

COMET USER Guide

Links & Literature

Lunaphore COMET

Reagents

 

Application

Reagent/Item

Cat. No.

RNAscope HiPlex Pro for COMET 12-plex Kit

RNAscope HiPlex Pro AMP 1

ACD (Bio-Techne) 322075

RNAscope HiPlex Pro AMP 2

RNAscope HiPlex Pro AMP 3

RNAscope HiPlex Pro Fluoro T1-T4

RNAscope HiPlex Pro Fluoro T5-T8

RNAscope HiPlex Pro Fluoro T9-T12

RNAscope HiPlex PretreatPro™

RNAscope HiPlex Pro Probe Diluent

RNAscope HiPlex Pro DAPI (1 mg/mL)

RNAscope HiPlex Cleaving Stock Solution v2

RNAscope HiPlex Pro Imaging Buffer Part A

RNAscope HiPlex Pro Imaging Buffer Part B

 

RNAscope HiPlex Pro for COMET 12-plex Kit

RNAscope HiPlex Pro AMP 1

ACD (Bio-Techne) 322075

RNAscope HiPlex Pro AMP 2

RNAscope HiPlex Pro AMP 3

RNAscope HiPlex Pro Fluoro T1-T4

RNAscope HiPlex PretreatPro™

RNAscope HiPlex Pro Probe Diluent

RNAscope HiPlex Pro DAPI (1 mg/mL)

RNAscope HiPlex Cleaving Stock Solution v2

RNAscope HiPlex Pro Imaging Buffer Part A

RNAscope HiPlex Pro Imaging Buffer Part B

 

Control Probes

RNAscope HiPlex12 CS Negative Control Probe

ACD (Bio-Techne) 324347

RNAscope HiPlex12 CS Positive Control Probe – Hs

ACD (Bio-Techne) 324317

RNAscope HiPlex12 CS Positive Control Probe – Mm

ACD (Bio-Techne) 324437

RNAscope HiPlex12 CS Positive Control Probe – Rn

ACD (Bio-Techne) 324337

 

Extras

RNAscope Control Slide -Human Hela Cell Pellet

ACD (Bio-Techne) 310045

RNAscope HiPlex Cleaving Stock Solution v2

ACD (Bio-Techne) 324399

 

Consumables

COMET chip (20-pack)

Lunaphore MK03

Multistaining Buffer 20x

Lunaphore BU06

Dewax and HIER Buffer L (pH 6)

Epredia AR02

Dewax and HIER Buffer H, pH 9

Epredia AR03

Imaging Buffer

Lunaphore BU09

Elution Buffer Kit

Lunaphore BU07-L

Blocking Buffer

Lunaphore BU10

Quenching Buffer Kit

Lunaphore BU08-L

20X SSC

Thermo Fisher 15557044

Xylene (or xylene-alternative, e.g. Histoclear)

Merck H2779

50 mL conical tubes

Falcon 352070

2 mL microtubes

Eppendorf 0030123344

SuperFrost Plus Adhesion Slides

Epredia J1830AMNZ

Alexa Fluor™ Plus 488 Goat anti-Mouse IgG

Thermo Fisher A32723

Alexa Fluor™ Plus 488 Goat anti-Rabbit IgG

Thermo Fisher A32731

Alexa Fluor™ Plus 488 Goat anti-Rat IgG

Thermo Fisher A48262

Alexa Fluor™ Plus 555 Goat anti-Mouse IgG

Lunaphore DR555MS

Alexa Fluor™ Plus 647 Goat anti-Mouse IgG

Lunaphore DR647MS

Alexa Fluor™ Plus 555 Goat anti-Rabbit IgG

Lunaphore DR555RB

Alexa Fluor™ Plus 647 Goat anti-Rabbit IgG

Lunaphore DR555RB

Alexa Fluor™ Plus 555 Goat anti-Rat IgG

Lunaphore DR555RT

Alexa Fluor™ Plus 647 Goat anti-Rat IgG

Lunaphore DR647RT

Alexa Fluor™ 750 Goat anti-Rabbit IgG

Thermo Fisher A-21039

Alexa Fluor™ 750 Goat anti-Mouse IgG

Thermo Fisher A-21037

DAPI solution

Lunaphore DR100

 

SPYRE™ Immuno-Oncology Core Panel Kit, human

This panel includes 13 validated monoclonal antibodies for FFPE human tissues:

αSMA, CD3, CD4, CD8, CD11c, CD20, CD45, CD56, CD68, FOXP3, Ki-67, PD-1, PD-L1

 

Lunaphore MP10010HU