Scientific collaborations with the Center for Microscopy and Image Analysis

ZORA Publication List

Publications

• 2024

  • Journal Article

    • Noble, Alexandra R; Masek, Markus; Hofmann, Claudia; Cuoco, Arianna; Rusterholz, Tamara D S; Özkoc, Hayriye; Greter, Nadja R; Phelps, Ian G; Vladimirov, Nikita; Kollmorgen, Sepp; Stoeckli, Esther; Bachmann-Gagescu, Ruxandra (2024). Shared and unique consequences of Joubert Syndrome gene dysfunction on the zebrafish central nervous system. Biology Open, 13(11):bio060421.
    • Gomez-Gonzalez, Alfonso; Burkhardt, Patricia; Bauer, Michael; Suomalainen, Maarit; Mateos, José María; Loehr, Morten O; Luedtke, Nathan W; Greber, Urs F (2024). Stepwise virus assembly in the cell nucleus revealed by spatiotemporal click chemistry of DNA replication. Science Advances, 10(43):eadq7483.
    • Vladimirov, Nikita; Voigt, Fabian F; Naert, Thomas; Araujo, Gabriela R; Cai, Ruiyao; Reuss, Anna Maria; Zhao, Shan; Schmid, Patricia; Hildebrand, Sven; Schaettin, Martina; Groos, Dominik; Mateos, José María; Bethge, Philipp; Yamamoto, Taiyo; Aerne, Valentino; Roebroeck, Alard; Ertürk, Ali; Aguzzi, Adriano; Ziegler, Urs; Stoeckli, Esther; Baudis, Laura; Lienkamp, Soeren S; Helmchen, Fritjof (2024). Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for cleared samples. Nature Communications, 15(1):2679.
    • Gallego, Lucía; Woods, Joseph F; Butti, Rachele; Szwedziak, Piotr; Vargas Jentzsch, Andreas; Rickhaus, Michel (2024). Shape‐Assisted Self‐Assembly of Hexa‐Substituted Carpyridines into 1D Supramolecular Polymers. Angewandte Chemie Internationale Edition, 63(11):e202318879.

• 2023

  • Journal Article

    • Maheshwari, Upasana; Mateos, José M; Weber-Stadlbauer, Ulrike; Ni, Ruiqing; Tamatey, Virgil; Sridhar, Sucheta; Restrepo, Alejandro; de Jong, Pim A; Huang, Sheng-Fu; Schaffenrath, Johanna; Stifter, Sebastian A; Szeri, Flora; Greter, Melanie; Koek, Huiberdina L; Keller, Annika (2023). Inorganic phosphate exporter heterozygosity in mice leads to brain vascular calcification, microangiopathy, and microgliosis. Brain Pathology, 33(6):e13189.
    • Schiano, Guglielmo; Lake, Jennifer; Mariniello, Marta; Schaeffer, Céline; Harvent, Marianne; Rampoldi, Luca; Olinger, Eric; Devuyst, Olivier (2023). Allelic effects on uromodulin aggregates drive autosomal dominant tubulointerstitial kidney disease. EMBO Molecular Medicine, 15(12):e18242.
    • Jongsma, Elisabeth; Goyala, Anita; Mateos, José María; Ewald, Collin Yvès (2023). Removal of extracellular human amyloid beta aggregates by extracellular proteases in C. elegans. eLife, 12:e83465.
    • Woods, Joseph F; Gallego, Lucía; Maisch, Amira; Renggli, Dominik; Cuocci, Corrado; Blacque, Olivier; Steinfeld, Gunther; Kaech, Andres; Spingler, Bernhard; Vargas Jentzsch, Andreas; Rickhaus, Michel (2023). Saddles as rotational locks within shape-assisted self-assembled nanosheets. Nature Communications, 14(1):4725.
    • Baum, Sebastian; Stengel, Patrick; Abe, Natsue; Acevedo, Javier F; Araujo, Gabriela R; Asahara, Yoshihiro; Avignone, Frank; Balogh, Levente; Baudis, Laura; Kilminster, Ben; Bramante, Joseph; Breur, Pieter Alexander; Caccianiga, Lorenzo; Capozzi, Francesco; Collar, Juan I; Ebadi, Reza; Edwards, Thomas; Eitel, Klaus; Elykov, Alexey; Ewing, Rodney C; Freese, Katherine; Fung, Audrey; Galelli, Claudio; Glasmacher, Ulrich A; Gleason, Arianna; Hasebe, Noriko; Hirose, Shigenobu; Horiuchi, Shunsaku; Hoshino, Yasushi; Huber, Patrick; et al (2023). Mineral detection of neutrinos and dark matter. A whitepaper. Physics of the Dark Universe, 41:101245.
    • Lucienne, Marie; Gerlini, Raffaele; Rathkolb, Birgit; Calzada-Wack, Julia; Forny, Patrick; Wueest, Stephan; Kaech, Andres; Traversi, Florian; Forny, Merima; Bürer, Céline; Aguilar-Pimentel, Antonio; Irmler, Martin; Beckers, Johannes; Sauer, Sven; Kölker, Stefan; Dewulf, Joseph P; Bommer, Guido T; Hoces, Daniel; Gailus-Durner, Valerie; Fuchs, Helmut; Rozman, Jan; Froese, D Sean; Baumgartner, Matthias R; de Angelis, Martin Hrabě (2023). Insights into energy balance dysregulation from a mouse model of methylmalonic aciduria. Human Molecular Genetics, 32(17):2717-2734.
    • Barz, Malwine Jeanette; Behrmann, Lena; Capron, Danaëlle; Zuchtriegel, Gabriele; Steffen, Fabio D; Kunz, Leo; Zhang, Yang; Vermeerbergen, Iria Jimenez; Marovca, Blerim; Kirschmann, Moritz; Zech, Antonia; Nombela-Arrieta, Cesar; Ziegler, Urs; Schroeder, Timm; Bornhauser, Beat; Bourquin, Jean-Pierre (2023). B and T cell acute lymphoblastic leukemia evade chemotherapy at distinct sites in the bone marrow. Haematologica, 108(5):1244-1258.
    • Ballikaya, Paula; Mateos, José María; Brunner, Ivano; Kaech, Andres; Cherubini, Paolo (2023). Detection of silver nanoparticles inside leaf of European beech (Fagus sylvatica L.). Frontiers in Environmental Science, 10:1107005.
    • Masek, Markus; Zang, Jingjing; Mateos, José María; Garbelli, Marco; Ziegler, Urs; Neuhauss, Stephan C F; Bachmann-Gagescu, Ruxandra (2023). Studying the morphology, composition and function of the photoreceptor primary cilium in zebrafish. Methods in Cell Biology, 175:97-128.

  • Working Paper

    • Vladimirov, Nikita; Voigt, Fabian F; Naert, Thomas; Araujo, Gabriela R; Cai, Ruiyao; Reuss, Anna Maria; Zhao, Shan; Schmid, Patricia; Hildebrand, Sven; Schaettin, Martina; Groos, Dominik; Mateos, José María; Bethge, Philipp; Yamamoto, Taiyo; Aerne, Valentino; Roebroeck, Alard; Ertürk, Ali; Aguzzi, Adriano; Ziegler, Urs; Stoeckli, Esther; Baudis, Laura; Lienkamp, Soeren S; Helmchen, Fritjof (2023). The Benchtop mesoSPIM: a next-generation open-source light-sheet microscope for large cleared samples. bioRxiv 2023.06.16, University of Zurich.

• 2022

  • Journal Article

    • Pearson, Adam; Haenni, Dominik; Bouitbir, Jamal; Hunt, Matthew; Payne, Brendan A I; Sachdeva, Ashwin; Hung, Rachel K Y; Post, Frank A; Connolly, John; Nlandu-Khodo, Stellor; Jankovic, Nevena; Bugarski, Milica; Hall, Andrew M (2022). Integration of High-Throughput Imaging and Multiparametric Metabolic Profiling Reveals a Mitochondrial Mechanism of Tenofovir Toxicity. Function, 4(1):zqac065.
    • Santos, Rui; Bürgi, Max; Mateos, José María; Luciani, Alessandro; Loffing, Johannes (2022). Too bright for 2 dimensions: recent progress in advanced 3-dimensional microscopy of the kidney. Kidney International, 102(6):1238-1246.
    • Polesel, Marcello; Kaminska, Monika; Haenni, Dominik; Bugarski, Milica; Schuh, Claus; Jankovic, Nevena; Kaech, Andres; Mateos, Jose M; Berquez, Marine; Hall, Andrew M (2022). Spatiotemporal organisation of protein processing in the kidney. Nature Communications, 13:5732.
    • Villegas-Hernández, Luis E; Dubey, Vishesh; Nystad, Mona; Tinguely, Jean-Claude; Coucheron, David A; Dullo, Firehun T; Priyadarshi, Anish; Acuña, Sebastian; Ahmad, Azeem; Mateos, José María; Barmettler, Gery; Ziegler, Urs; Birgisdottir, Åsa Birna; Hovd, Aud-Malin Karlsson; Fenton, Kristin Andreassen; Acharya, Ganesh; Agarwal, Krishna; Ahluwalia, Balpreet Singh (2022). Chip-based multimodal super-resolution microscopy for histological investigations of cryopreserved tissue sections. Light: Science & Applications, 11(1):43.

  • Book Section

    • Stoy, Henriette; Luethi, Joel; Roessler, Fabienne K; Riemann, Johannes; Kaech, Andres; Lopes, Massimo (2022). Direct R-Loop Visualization on Genomic DNA by Native Automated Electron Microscopy. In: Aguilera, Andrés; Ruzov, Alexey. R-Loops: Methods and Protocols. New York: Springer, 1-20.

• 2021

  • Journal Article

    • Cortés Sanchón, Adrián; Santhosh Kumar, Harshitha; Mantovani, Matilde; Osinnii, Ivan; Mateos, José María; Kaech, Andres; Shcherbakov, Dimitri; Akbergenov, Rashid; Böttger, Erik C (2021). ER-misfolded proteins become sequestered with mitochondria and impair mitochondrial function. Communications Biology, 4(1):1350.

Pagination